Peer-Reviewed Journal Articles

2025

34.
S.J. Weintraub, Z. Li, C.L. Nakagawa, J.H. Collins, E.M. Young
Biotechnology and Bioengineering (2025) · doi

2024

33.
A. Adler, J.S. Bader, B. Basnight, B.W. Booth, J. Cai, E. Cho, J.H. Collins, Y. Ge, J. Grothendieck, K. Keating, T. Marshall, A. Persikov, H. Scott, R. Siegelmann, M. Singh, A. Taggart, B. Toll, K.H. Wan, D. Wyschogrod, F. Yaman, E.M. Young, S.E. Celniker, N. Roehner
ACS Synthetic Biology (2024) · doi
32.
B. Yang, B. Vaisvil, D. Schmitt, J. Collins, E.M. Young, V. Kapatral, R. Rao
Infection and Immunity (2024) · doi · preprint
31.
E.E. Tobin*, J.H. Collins*, C.B. Marsan, G.T. Nadeau, K. Mori, A. Lipzen, S. Mondo, I.V. Grigoriev, E.M. Young
*= equal contribution
Applied Microbiology and Biotechnology (2024) · doi · preprint

2023

30.
E.M. van Zyl, M.A. Kennedy, W. Nason, S.J. Fenlon, E.M. Young, L.J. Smith, S.R. Bhatia, J.M. Coburn
Biomaterials Advances (2023) · doi
29.
K.W. Keating, E.M. Young
ACS Synthetic Biology (2023) · doi · preprint
28.
J.H. Collins, L. Kunyeit, S. Weintraub, N. Sharma, C. White, N. Haq, K.A. Anu-Appaiah, R.P. Rao, E.M. Young
G3: Genes, Genomes, Genetics (2023) · doi
27.
J.H. Collins, E.M. Young
Microbiology Resource Announcements (2023) · doi
26.
C. Brzycki Newton, E.M. Young, S.C. Roberts
Frontiers in Bioengineering and Biotechnology (2023) · doi
25.
J.H. Collins, A. Cosio, G. Brogan, L. Chico, A. Rozen, E. Thomson, E.M. Young
Microbiology Resource Announcements (2023) · doi
24.
B. Peng, S.J. Weintraub, Z. Lu, S. Evans, Q. Shen, L. McDonnell, M. Plan, T. Collier, L.C. Cheah, L. Ji, C.B. Howard, W. Anderson, M. Trau, G. Dumsday, E.L. Bredeweg, E.M. Young, R. Speight, C.E. Vickers
ACS Synthetic Biology (2023) · doi

2022

23.
B.T. McInnes, J.S. Downie, Y. Hao, J. Jett, K. Keating, G. Nakum, S. Ranjan, N.E. Rodriguez, J. Tang, D. Xiang, E.M. Young, M.H. Nguyen
ACS Synthetic Biology (2022) · doi
22.
J. Beal, C.A. Telmer, A. Vignoni, Y. Boada, G.S. Baldwin, L. Hallett, T. Lee, V. Selvarajah, S. Billerbeck, B. Brown, G. Cai, L. Cai, E. Eisenstein, D. Kiga, D. Ross, N. Alperovich, N. Sprent, J. Thompson, E.M. Young, D. Endy, T. Haddock-Angelli
Synthetic Biology (2022) · doi

2021

21.
J.H. Collins, K.W. Keating, T.R. Jones, S. Balaji, C.B. Marsan, M. Çomo, Z.J. Newlon, T. Mitchell, B. Bartley, A. Adler, N. Roehner, E.M. Young
Nature Communications (2021) · doi · preprint
20.
J. Mante, Y. Hao, J. Jett, U. Joshi, K. Keating, X. Lu, G. Nakum, N.E. Rodriguez, J. Tang, L. Terry, X. Wu, E. Yu, J.S. Downie, B.T. McInnes, M.H. Nguyen, B. Sepulvado, E.M. Young, C.J. Myers
ACS Synthetic Biology (2021) · doi
19.
J. Mante, N. Roehner, K. Keating, J.A. McLaughlin, E.M. Young, J. Beal, C.J. Myers
ACS Synthetic Biology (2021) · doi

2020

18.
Y. Chen, S. Zhang, E.M. Young, T.S. Jones, D. Densmore, C.A. Voigt
Nature Microbiology (2020) · doi

2018

17.
A. Casini*, F.-Y. Chang*, R. Eleure*, A. King*, E.M. Young*, Q.M. Dudley, A. Karim, K. Pratt, C. Bristol, A. Forget, A. Ghodasara, R. Warden-Rothman, R. Gan, A. Cristofaro, A.E. Borujeni, M.-H. Ryu, J. Li, Y.-C. Kwon, H. Wang, E. Tatsis, C. Rodriguez-Lopez, S. O’Connor, M.H. Mdema, M.A. Fischbach, M.C. Jewett, C.A. Voigt, and D.B. Gordon
* = Equal contribution
Journal of the American Chemical Society (2018) · doi
16.
E.M. Young, Z. Zhao, B.E.M. Gielesen, L. Wu, D.B. Gordon, J.A. Roubos, C.A. Voigt
Metabolic Engineering (2018) · doi

2017

15.
S. Buren, E.M. Young, E. Sweeny, C.A. Voigt, and L. Rubio
ACS Synthetic Biology (2017) · doi

2016

14.
DoubleDutch: a tool for designing combinatorial libraries of metabolic pathway variants
N. Roehner, E.M. Young, C.A. Voigt, D.B. Gordon, and D. Densmore
​ACS Synthetic Biology (2016)

2014

13.
E.M. Young, A. Tong, H. Bui, C. Spofford, and H.S. Alper
Proceedings of the National Academies of Science of the United States of America (2014) · doi

2012

12.
E.M. Young, A.D. Comer, H. Huang, and H.S. Alper
Metabolic Engineering (2012) · doi

2011

11.
E.M. Young, A. Poucher, A.D. Comer, A. Bailey, and H.S. Alper
Applied and Environmental Microbiology (2011) · doi

Preprints

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2025

2023

9.
K.W. Keating, E.M. van Zyl, J.H. Collins, C. Nakagawa, S.J. Weintraub, J.M. Coburn, E.M. Young
bioRxiv (2023) · doi

Reviews

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8.
K.A. Haynes*, L.B. Andrews, C.L. Beisel, J. Chappell, C.E. Cuba Samaniego, J.E. Dueber, M.J. Dunlop, E. Franco, J.B. Lucks, V. Noireaux, D.F. Savage, P.A. Silver, M. Smanski, E.M. Young
*= corresponding
ACS Synthetic Biology (2024) · doi
7.
K.W. Keating, E.M. Young
Current Opinion in Chemical Engineering (2019) · doi
6.
J.H. Collins, E.M. Young
Current Opinion in Biotechnology (2018) · doi
5.
E.M. Young, S.-M. Lee, and H.S. Alper
​Biotechnology for Biofuels (2010) · doi
4.
E.M. Young and H.S. Alper
Journal of Biomedicine and Biotechnology (2010) · doi

Book Chapters

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3.
Z. Li, E.M. Young
Transforming Molecular Biology with Emerging Technologies (Methods in Molecular Biology, vol. 3043, Humana, New York) (2026) · doi
2.
C.M. Brzycki, E.M. Young, S.C. Roberts
Exploring Plant Cells for the Production of Compounds of Interest (Springer) (2021) · doi
1.
S.-M. Lee, E.M. Young, and H.S. Alper
Direct Microbial Conversion of Biomass to Advanced Biofuels (2015)

Patents

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2.
H.S. Alper, S.-M. Lee, E.M. Young
(2015)
1.